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Diploid Genome Sequence software
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Diploid Genome Sequence

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Released: September 11, 2012  |  Added: September 11, 2012 | Visits: 217

RDXplorer The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group.



Platforms: Mac, Solaris, Linux

License: Freeware Size: 339.36 MB Download (27): RDXplorer Download

Released: June 17, 2014  |  Added: June 17, 2014 | Visits: 72

MyGenome Explore a real human genome. Find out about possible health implications. View reports about important genetic variations. The MyGenome app provides a simple, intuitive, and educational interface to get you started on your journey of genome discovery and learning. In the MyGenome app youll see:...





Platforms: iOS

License: Shareware Cost: $0.99 USD Size: 267 MB Download (7): MyGenome Download

Added: November 02, 2013 | Visits: 175

RDXplorer The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group.


Platforms: *nix

License: Freeware Size: 339.27 MB Download (16): RDXplorer Download

Released: June 08, 2012  |  Added: June 08, 2012 | Visits: 311

Integrated Genome Browser The Integrated Genome Browser (IGB, pronounced Ig-Bee) is an interactive, zoomable, scrollable software program you can use to visualize and explore genome-scale data sets, such as tiling array data, next-generation sequencing results, genome annotations, microarray designs, and the sequence...


Platforms: Windows

License: Freeware Size: 8.4 MB Download (43): Integrated Genome Browser Download

Released: November 04, 2012  |  Added: November 04, 2012 | Visits: 244

UGENE UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll


Platforms: Windows

License: Freeware Download (51): UGENE Download

Added: August 01, 2013 | Visits: 222

Genome Workbench NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own private data. Genome Workbench can display sequence data in many ways,...


Platforms: Mac

License: Freeware Size: 35.54 MB Download (16): Genome Workbench Download

Released: October 07, 2012  |  Added: October 07, 2012 | Visits: 332

Artemis Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis is written in Java, and is available for UNIX, Macintosh and...


Platforms: Windows, Mac, Linux, Java

License: Freeware Size: 10 MB Download (49): Artemis Download

Released: December 07, 2012  |  Added: December 07, 2012 | Visits: 238

genome-tools Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format. A CGI-based web interface is also available. Please cite: Lee, W., Chen S.L. BioTechniques 33:1334-1341 (Dec 20


Platforms: Windows, Mac, Linux

License: Freeware Size: 43.83 KB Download (27): genome-tools Download

Added: October 10, 2013 | Visits: 172

Annotate Sequence with GFF The Annotate Sequence with GFF File makes it very easy to annotate a sequence with annotations from a GFF file (Generic Feature Format). A GFF file does not contain any sequence information, it only contains a list of annotations. You can read more about the format at...


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 368.64 KB Download (16): Annotate Sequence with GFF Download

Released: January 11, 2005  |  Added: September 11, 2006 | Visits: 6.053

EventStudio Sequence Diagram Designer Sequence diagrams are a very effective way of modeling an object oriented system. Unfortunately, most UML based modeling tools only offer primitive support for sequence diagrams. EventStudio provides advanced constructs for sequence diagram based object modeling. EventStudio supports generation...


Platforms: Windows

License: Shareware Cost: $99.00 USD Size: 3.22 MB Download (297): EventStudio Sequence Diagram Designer Download

Released: July 11, 2005  |  Added: July 03, 2006 | Visits: 7.673

Sequence Diagram Editor Windows modeling tool that simplifies and speeds up the creation and maintenance of UML sequence diagrams, telecom/wireless call flow diagrams and process workflow diagrams. Sequence Diagram Editor performs automatic layout/formatting (across multiple pages if necessary) and supports additional...


Platforms: Windows

License: Shareware Cost: $99.00 USD Size: 6.82 MB Download (538): Sequence Diagram Editor Download

Added: September 21, 2010 | Visits: 1.023

UML::Sequence UML::Sequence is a Perl module to render UML sequence diagrams, often by running the code. SYNOPSIS use UML::Sequence; my $tree = UML::Sequence->new(@methods, @outline, &parse_method); print $tree->build_xml_sequence(Title); To use this package, or see how to use it, see genericseq.pl...


Platforms: *nix

License: Freeware Size: 122.88 KB Download (142): UML::Sequence Download

Added: January 11, 2010 | Visits: 659

UML::Sequence::JavaSeq UML::Sequence::JavaSeq is a Perl module for use with genericseq.pl script, works on compiled Java programs. SYNOPSIS genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello > Hello.xml seq2svg.pl Hello.xml > Hello.svg OR genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello |...


Platforms: *nix

License: Freeware Size: 122.88 KB Download (75): UML::Sequence::JavaSeq Download

Added: July 09, 2010 | Visits: 1.003

Chart::Sequence Chart::Sequence is a sequence Perl class. SYNOPSIS use Chart::Sequence; my $s = Chart::Sequence->new( Nodes => [qw( A B C )], Messages => [ [ A => B => "Message 1" ], [ B => A => "Ack 1" ], [ B => C => "Message 2" ], ], ); # or # my $s = Chart::Sequence->new( SeqMLInput =>...


Platforms: *nix

License: Freeware Size: 15.36 KB Download (88): Chart::Sequence Download

Added: March 15, 2010 | Visits: 833

Sequence Analysis Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in...


Platforms: *nix

License: Freeware Size: 2.3 MB Download (90): Sequence Analysis Download

Added: January 25, 2010 | Visits: 546

MacVector MacVector... Researchers who want a simple but comprehensive desktop sequence analysis application continually turn to MacVector, the leading sequence analysis package for the Macintosh. MacVector provides sequence editing, primer design, Internet database searches, protein analysis, sequence...


Platforms: Mac

License: Shareware Cost: $0.00 USD Download (101): MacVector Download

Released: November 10, 2012  |  Added: November 10, 2012 | Visits: 226

Celera Genome Browser for Linux The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006.


Platforms: Linux

License: Freeware Size: 5.7 MB Download (54): Celera Genome Browser for Linux Download

Released: September 17, 2012  |  Added: September 17, 2012 | Visits: 271

Celera Genome Browser The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006.


Platforms: Linux

License: Freeware Size: 5.7 MB Download (50): Celera Genome Browser Download

Released: November 11, 2012  |  Added: November 11, 2012 | Visits: 338

Short Sequence Location Mapper Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time. SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences). The...


Platforms: Windows

License: Freeware Download (53): Short Sequence Location Mapper Download

Released: June 10, 2012  |  Added: June 10, 2012 | Visits: 306

TB antibiotic resistance mapper TB antibiotic resistance mapper was developed as a specialized tool that can help you map sequencing reads with the MTB reference genome (H37Rv) using NCBI blast, in order to find out mutation sites. Now you can quickly discover mutations with the help of this instrument.


Platforms: Windows

License: Freeware Download (40): TB antibiotic resistance mapper Download

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